rs215323219 SNP Detail

Summary

• ID
  rs215323219
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:3121103 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGGGTTTGCT GCCAATCATG GTGGTCTGAG TTCAATCTCT
  GGAGCCCACA CAAAAGAGAA GAGAAGTGAC TTCTGCAGGC TGTCTTCTGA CCTCACACAA
  A
  CATACATGGT ACACAGGAGC CACACACATT TAAACAAGCA CACAAATGTA AGAAAACATT
  TAAAGGGTAC GAGGAATATA TTATTTTGTG TTATGATTT                       
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323546731	CHEV_11_3071106	CHEVERUD	SCREENING_POP	f	SNP	A	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs215323219					SNP	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:3121103 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2457	CpG island 2457	1203 bp proximal
Rr441479	regulatory region 441479	1713 bp distal
Rr441480	regulatory region 441480	891 bp distal
Rr441481	regulatory region 441481	within coordinates
Rr441482	regulatory region 441482	158 bp proximal
Rr441483	regulatory region 441483	1092 bp proximal
Rr441484	regulatory region 441484	1568 bp proximal
Sfi1	Sfi1 homolog, spindle assembly associated (yeast)	within coordinates
Tssr106448	transcription start site region 106448	1692 bp downstream