rs215323877 SNP Detail

Summary

• ID
  rs215323877
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:127294618 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTTGGAAGG TTGGGAAGCC
  ATGCTTTGAC TTCTAGTTGA TAACTTAAAA GCACAAACTT TTTCTACGTG TTACAGTTTC
  TCAAGTGCCC ATTAGAAATT ATACATGTCT GGGCTTGGGG TGGGGGATAG CTCGGTGATA
  TCATGCTTGC CTAGAATGTG CAAGGCAACG CTAATGGATA TAGTGCTGAG GACGTAGCTC
  R
  GGTTTATCAT TGCAACTGCT TGTGCCTCCC TCTCCATTAA AAGAAACTCA AGCCCTCACC
  TAGGTTTGGT GGCATACACA TATAACCCCC CCCCCCACAC ACACACACAC AAGATATAGA
  GGAAAATCAA GGTCACCCCC AATGTTTGAG GTCAGCCTGG GCTACATAAA ACTCTATCTT
  AAGGAAAATA AGTAAAAAGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320954706	CHEV_3_127203887	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs215323877					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127294618 () rs orientation: forward

Symbol	Name	Function Class
Ank2	ankyrin 2, brain	1619 bp upstream
Cpgi13791	CpG island 13791	1560 bp distal
Gm64355	predicted gene, 64355	1283 bp downstream
Rr584800	regulatory region 584800	1478 bp distal
Tssr35576	transcription start site region 35576	1931 bp upstream
Tssr35577	transcription start site region 35577	1898 bp upstream
Tssr35578	transcription start site region 35578	1876 bp upstream
Tssr35579	transcription start site region 35579	1832 bp upstream