rs215325400 SNP Detail

Summary

• ID
  rs215325400
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:35023547 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCCCCTTCC CCACGTGTCT
  CAACGGTTGC CCAAGAAAGT CTTTTCAGCC TTGTGGGAGC CGGCTGCATT TCCAAGGAAA
  AGGGGAGCAG GCAGGCGGGG CAGATGGAAG TAATTACCGG CGGGAAAGAG GAGAGGCGCA
  GGGTTGGGAG GGGCCCGCTG GGACTGAGAG AGGGAGGGAG CGGAGCCCTG GCCCGCCCCA
  Y
  AGAAGGGAGA AGCCCAACTA GACATAGGTT CTGGCAGCTT AAGGAGGCCT GGATTTGTAG
  TCCCTCTTTG ATACTAAGTA ACCGTGACCC TGACGTCTTC CCATATCTGA TGGGACTGGT
  TAAGACAAGC TCCAGCTCAG AAGTGGAGAA AACAGGGCTG AGAAGTGCAG GCTTGGGAGC
  CACACTCAGC CCCACAGTTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322899081	CHEV_9_34919836	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs215325400					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:35023547 () rs orientation: forward

Symbol	Name	Function Class
Rr206179	regulatory region 206179	within coordinates
Rr206180	regulatory region 206180	1853 bp proximal
Rr383192	regulatory region 383192	within coordinates
St3gal4	ST3 beta-galactoside alpha-2,3-sialyltransferase 4	within coordinates