rs215329510 SNP Detail

Summary

• ID
  rs215329510
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:45225502 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGGCTGGAC TGAGAAAACC
  AGAAACACTG CTGCATTTTT AACTACTCTG TAACTATGGC AACAAATGAT AAATAACTAT
  TTATGCCAGC TTCATTGTGA AACTGGCCAA TTACCAAAAC ACTCCGGGAA TAAATCCTTC
  GAATGGTTAA CTGACTGTGG AGAGACGAAT GTGAACAATG TATTAACAGA TTCTTCAAGA
  Y
  TGAGCCTCAA TAGAGAACAC TTAAGTGCCA TTTGTTTTCC ATCTGGGGCC ACAAACATGA
  CTCTAGAGGA TTACAAGAAC AGTTCCTGTT TTGTTTTGTT AGGATTGCTT AAGCAAGTCG
  TTGTTATAGG AAGGCAAAGG CCACTCTGTG GTGTGCACGG TTCCATTTCT TGGATGGATA
  GGTTTGCTTT TCAGTTCCTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324582452	CHEV_14_45607720	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs215329510					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:45225502 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6357	CpG island 6357	680 bp proximal
Gm17173	predicted gene 17173	within coordinates
Gm49364	predicted gene, 49364	within coordinates
Gm63525	predicted gene, 63525	1982 bp downstream
Ptger2	prostaglandin E receptor 2 (subtype EP2)	150 bp upstream
Rr491040	regulatory region 491040	within coordinates
Rr491041	regulatory region 491041	1799 bp proximal
Tssr4380	transcription start site region 4380	723 bp downstream
Tssr125199	transcription start site region 125199	119 bp upstream
Tssr125200	transcription start site region 125200	147 bp upstream
Tssr125201	transcription start site region 125201	411 bp upstream
Tssr125202	transcription start site region 125202	531 bp upstream
Tssr125203	transcription start site region 125203	608 bp upstream
Tssr125204	transcription start site region 125204	851 bp upstream
Tssr128221	transcription start site region 128221	1628 bp downstream
Tssr128222	transcription start site region 128222	1805 bp downstream
Tssr128223	transcription start site region 128223	1857 bp downstream