rs215354479 SNP Detail

Summary

• ID
  rs215354479
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:115909069 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACTCCTCCC TGTGTATCTG
  AGCACTCCTC CACATGTTTC TGAGTACTCC TCCCTGTGTA TCTGAGCACT CCATGAATAT
  CTGAGCACTC CTCCACGTGT ATCTGAGCAC TTCATGTGTA TCTGAGCACT CCTCCACATG
  TATATGAACA TTTTTCCCTG TGCTTAGCAA TTTCACCTGG CTTGTTCCCC CCACCCCCCC
  A
  CCCCCGGAAA GCATTTCTTC ATCAAGGCCT CAGAATTTTC TGTGTATCTA ATTTTGGAAT
  CTCTAACGTA GTTAGGATCT TTCAAGTTAT CTTCTCAAGA AAGATAGCCA CTGAGCCACT
  CAGTCATTCA ATAACCAAGT ATTTCCAAAT TGGCATGTCA TGGTGGATCA CCACACCATG
  TGTGCATCCA TGCTGGTGAA                                            
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/10SnJ	C57BR/cdJ	CAST/EiJ	CE/J	FVB/NJ	JF1/MsJ	LG/J	MA/MyJ	NON/ShiLtJ	NZO/HlLtJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SPRET/EiJ	SWR/J
ss379048610	MGP_WTSI_9_115989119	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/10SnJ	C57BR/cdJ	CAST/EiJ	CE/J	FVB/NJ	JF1/MsJ	LG/J	MA/MyJ	NON/ShiLtJ	NZO/HlLtJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SPRET/EiJ	SWR/J
rs215354479					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss379048610	MGP_WTSI_9_115989119	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:115909069 () rs orientation: forward

Symbol	Name	Function Class
Gm18328	predicted gene, 18328	within coordinates