rs215359877 SNP Detail

Summary

• ID
  rs215359877
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:131645599 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCAGAGAGA GGAGCCTAGT
  CAACTTCCAT CCAAGTACGG CTTGGGGAGA CGACTCTATT GTCACAAGGG CCTTGTTCCC
  TCAGGGGCTC CAGGGTCACC AAGTTCTGCC TTCTCCGCTC TAGGCTCTAG AGAGTCACAG
  AATCCACATT AAATTTTCCT GTCAGCAGCC CAAGGACACC TAGAAAGAGC CCAGCATCAC
  Y
  CAGAGTAGAG CTTCCAGAGC GAGCATGGAT TCAGCGAGCT ACAGCCACTA CTCTCTAAGG
  ACCTGAGCTC TTGGTGGGTG GGATTAGTTC AGAGTCCTGA ATCCCAACAT TGCCAGGTAC
  TGGCAGGGCC ACCTGGGGCA AGGAACTCCT CCTCTCTGGG ACTCAGCCTT CAGGAAATAG
  AGCCTTGGGA GTCTGGGTTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321329086	CHEV_4_131474203	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs215359877					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:131645599 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14946	CpG island 14946	1525 bp distal
Cpgi14947	CpG island 14947	1423 bp proximal
Gm12992	predicted gene 12992	within coordinates
Gm68339	predicted gene, 68339	1897 bp downstream
Rr85750	regulatory region 85750	999 bp distal
Rr85751	regulatory region 85751	399 bp distal
Rr100127	regulatory region 100127	1998 bp distal
Rr100128	regulatory region 100128	201 bp proximal