rs215359960 SNP Detail

Summary

• ID
  rs215359960
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:84170226 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAATATGTAG CGGTGTGTAT
  GTACTTGCTT GTGCCTGTGC AAGGTGCCTG CAGATGCCAG AAGAGGGAAT CAGACCCCTG
  GGATTGGGGT TACAGGTGGC TGTGAACCAT TTGGTGAGGA TGATGAGAAC TCAACTCAGC
  TTCCCGTGAA AGAGCAATAA GTACTGTTAA CTTCTGAGCC ATTTCTACAA CTCCCGGGTA
  Y
  CTTAAACCAA TCAAGCAGGA TTTGCTAACA CGTGACCGTA ATCCTTTATA AATAAAGTAC
  CTACCATTTA GTGTTTGAGA CGAAAGTATT AGGCTTGGAC TACAATTCAG GATTTGAAGG
  AAGGAGAATA TGGGAAGAGA GGGAAACCCC AGGTAACGCT AAGAGGAGTG CCAACAAAAT
  AGAATGAATA TGGGCAACAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss375378225	MGP_WTSI_8_85967496	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs215359960					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss375378225	MGP_WTSI_8_85967496	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:84170226 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20643	CpG island 20643	739 bp distal
Rr186940	regulatory region 186940	25 bp distal
Rr401003	regulatory region 401003	886 bp downstream
Scoc	short coiled-coil protein	within coordinates
Tssr82001	transcription start site region 82001	1161 bp upstream
Tssr82002	transcription start site region 82002	1130 bp upstream
Tssr82003	transcription start site region 82003	1090 bp upstream
Tssr82004	transcription start site region 82004	1054 bp upstream
Tssr82005	transcription start site region 82005	1003 bp upstream
Tssr82006	transcription start site region 82006	967 bp upstream
Tssr82007	transcription start site region 82007	930 bp upstream