rs215366552 SNP Detail

Summary

• ID
  rs215366552
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:136495519 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCACGAATCT TCATCAACAA
  AACAAAACAA AAAGATAAAA ATTAAAAAAA ATTTTTTTTT CGAATAAATT ACCGTACTCT
  AGGTTCTCTA GACTTATGGA AAAATCTTTT CGCTTTTTAA ACACCTACTT TTTTTTTTCT
  CAAGTCTCAT GGAGGGGTGG CCACTGAGGA ATCTCCATGC AAAAAAAAAA ATAAAAAAAT
  T
  AAAAAAAAAA CAAAAAAAAC CCCAATCACC TCCAGGATAA AAAAGAAAAG AGCCAACCGG
  AAAAAAAAAA AATCACCTCC GGATGCGATC GAAAAGACGG CAGCGCCACC ACCGCAGACG
  GGCTACAATT TCAAGGCAGG AGGCGTGGCC AAAAATCCCT CATTCAAATA AAAAACCAGG
  AGATTTGCAT GGAGAATAGG                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss370211550	MGP_WTSI_6_136467042	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs215366552					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss370211550	MGP_WTSI_6_136467042	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:136495519 () rs orientation: forward

Symbol	Name	Function Class
Atf7ip	activating transcription factor 7 interacting protein	Intron
Cpgi18104	CpG island 18104	80 bp proximal
Gm44140	predicted gene, 44140	within coordinates
Rr400014	regulatory region 400014	47 bp upstream
Rr400015	regulatory region 400015	445 bp upstream
Rr640000	regulatory region 640000	907 bp distal
Rr640001	regulatory region 640001	within coordinates
Rr640002	regulatory region 640002	127 bp proximal
Rr640003	regulatory region 640003	292 bp proximal
Rr640004	regulatory region 640004	945 bp proximal
Rr640005	regulatory region 640005	1890 bp proximal
Tssr59315	transcription start site region 59315	265 bp upstream
Tssr59316	transcription start site region 59316	299 bp upstream
Tssr59317	transcription start site region 59317	345 bp upstream
Tssr59318	transcription start site region 59318	1882 bp upstream
Tssr63803	transcription start site region 63803	20 bp upstream
Tssr63804	transcription start site region 63804	240 bp downstream
Tssr63805	transcription start site region 63805	537 bp downstream