rs215369657 SNP Detail

Summary

• ID
  rs215369657
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:35028683 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGGCTGGAT CGGGTGAGGG
  CAAACCCAGG GCAAGCGCTG CCTGTGAATG GCTCCAAGAT GAGTATGCCC AACGTTGCCT
  CTAGCACTGA TCCCACGCTC TCCTGGAAAC AATAACCAAG AAAGGCTTCT TTGCTGTCCC
  CGCGCGGTTA AAAAAAAAAA AAGTATCCTT TTCTCTCTAC AGAAACTCAA GAACAGGAAT
  R
  GAAGTCCATC CTTCCAATAT CCTCCCATGC CCTCATGGCA GTCAGGTGAC CTAAATTGAC
  GAGCCTTTTC TCTGCCCCAG GCCGGCCTAT GCGCCCCAAA CTGCTCCCTT AGCTCTTCCT
  CCTTTGCATA CCCTCTCTTA GCCTTGGATA ACTTCTCAGT TTCCGTTCTT GCTGAAGGCG
  CCAGGCATCC TGTCTCCAGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322899101	CHEV_9_34924972	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs215369657					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:35028683 () rs orientation: forward

Symbol	Name	Function Class
4930581F22Rik	RIKEN cDNA 4930581F22 gene	within coordinates
Cpgi21550	CpG island 21550	106 bp distal
Gm57537	predicted gene, 57537	within coordinates
Rr676432	regulatory region 676432	639 bp distal
Rr676433	regulatory region 676433	525 bp distal
Rr676434	regulatory region 676434	343 bp distal
Rr676435	regulatory region 676435	within coordinates
St3gal4	ST3 beta-galactoside alpha-2,3-sialyltransferase 4	523 bp upstream
Tssr84325	transcription start site region 84325	620 bp downstream
Tssr84326	transcription start site region 84326	441 bp downstream
Tssr88717	transcription start site region 88717	594 bp upstream
Tssr88718	transcription start site region 88718	496 bp upstream
Tssr88719	transcription start site region 88719	401 bp upstream
Tssr88720	transcription start site region 88720	307 bp downstream
Tssr88721	transcription start site region 88721	1748 bp downstream
Tssr88722	transcription start site region 88722	1803 bp downstream