rs215372035 SNP Detail

Summary

• ID
  rs215372035
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:57276783 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGGCATGTA GTATGCCCTC
  AATAAATAGA TAAGTTAGAG TGACTTCAAT AGCTCAACAC TAAATTACCA GAGCATCAGT
  GGCTAGGGTG GGGTGCAGGA GTTCTAGATT AGATAGGGCA GCATAGGGAC ACTACTTCTC
  TTTCTTTAAA AGGAGAAAAA TATTCGAATA TTATCAGCTA TATCATCTAA TAGAATTCCA
  Y
  ATTACTCCTA TACTTCGCTT TAAAAATATC CCTGGCGTTC AGCCCTTTCT TTTAAGTTCT
  GCGATTGAAC ATTCTGAGTA CACCCTTTCT AGTCCTGAAG TCAAAATGTC ACCAGCCTTA
  AAGCTTTTCT GAAACCATTG GCCGATGTCT AAGTCTCACT CTGGCTCACT TCGCAGGACC
  TTTCCTTCTG TCCCCGCAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324050325	CHEV_12_58330984	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs215372035					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:57276783 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4649	CpG island 4649	52 bp proximal
Mipol1	mirror-image polydactyly 1	430 bp upstream
Prps1l3	phosphoribosyl pyrophosphate synthetase 1-like 3	415 bp upstream
Rr403305	regulatory region 403305	380 bp upstream
Tg(H2-K1-Ifnb1)10Seif	transgene insertion 10, Isabelle Seif	within coordinates
Tssr113519	transcription start site region 113519	409 bp upstream
Tssr113520	transcription start site region 113520	468 bp upstream
Tssr113521	transcription start site region 113521	517 bp upstream