rs215381744 SNP Detail

Summary

• ID
  rs215381744
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr10:13427441 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTGTGTGCC ACCACACCCA
  GTTTTTTCCT TCCTCTTCAT CTCCAAATAT AAAACTCTCA ATATCGTTTC AAAAAAAACC
  TATTACTATA TGCATATACT CTTTAATTTC TCCTATGATT ATTTCTGATC TGCCATTAAG
  TATTTCATAA ACTGTAAGGG TTAGGCTTTT CCCTCTGAAA TTGCTAGAGA CAATTTTCTT
  Y
  CCTTAGGTAG AGCAAAAATT TTTCTTTATA CGTCTTCCAT GACAACTTTA TCTTTAGCAT
  ATGTATTCTA TAATATTGGT ACAATTTATA TACCTTAGAT ATTAGAGACT GGAGGTAATA
  TAAAACACAT TGTATCTATA AAGTATTTCC TATAAAATAT GAACTATTAT TCATTTGTGC
  TATACCTCAG AGATATGCAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss379486943	MGP_WTSI_10_13271503	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs215381744					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss379486943	MGP_WTSI_10_13271503	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:13427441 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Adat2	adenosine deaminase, tRNA-specific 2			1210 bp upstream
Cpgi1315	CpG island 1315			1154 bp proximal
Pex3	peroxisomal biogenesis factor 3			Intron
				Noncoding-Transcript-Variant
Rr368928	regulatory region 368928			1242 bp upstream
Rr427802	regulatory region 427802			870 bp proximal
Rr427803	regulatory region 427803			1131 bp proximal
Rr427804	regulatory region 427804			1208 bp proximal
Rr427805	regulatory region 427805			1413 bp proximal
Tssr92399	transcription start site region 92399			1490 bp upstream
Tssr92400	transcription start site region 92400			1548 bp upstream
Tssr96771	transcription start site region 96771			1158 bp downstream
Tssr96772	transcription start site region 96772			1302 bp downstream
Tssr96773	transcription start site region 96773			1366 bp downstream
Tssr96774	transcription start site region 96774			1414 bp downstream
Tssr96775	transcription start site region 96775			1443 bp downstream
Tssr96776	transcription start site region 96776			1458 bp downstream