rs215398674 SNP Detail

Summary

• ID
  rs215398674
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:124153017 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACAGTTTCT GGGTCTCTTG
  AAACTGTTGT TGTTTTAGCT ATTTCTGGGG ACCATCTGTT CTTGGCCCTG GGCCGGGGCC
  CTAGTGCTTG ACCACAGATA TCCTGTTTGG CCCTAGTCCC GGTACTTTCC AGCCTCTCTG
  TACTTCCTTG TTCTTGTTTT TCTGAGAACA TCAGCTCTGG TATTTTCCCA TGCCTTGCAA
  R
  ATGGCGTTAC TGCAGTTAGC TGGCTAAGCC TTATGAAGGG GTCTTTCATT CCCCCCTCTT
  TCTGTAAACT GAATAAAATC TTTTATTCAC GTGATTTACA ATCTCCTATT GTCTTAAGTT
  GATGATATTG TTGAGTCAGA ACCAGGGCCT GCACTACCGA AATCCTGTCT TTGATAAACT
  GGACCAGGCG ATTGAGAATA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	CBA/J	DBA/1J	DBA/2J	LG/J	LP/J	NOD/ShiLtJ	NON/ShiLtJ	NZW/LacJ	SJL/J	SM/J	ST/bJ
ss376343693	MGP_WTSI_8_125950178	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	A	A	A	A	G	A	G	A
SNP Consensus Information
SNP					Consensus Type	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	CBA/J	DBA/1J	DBA/2J	LG/J	LP/J	NOD/ShiLtJ	NON/ShiLtJ	NZW/LacJ	SJL/J	SM/J	ST/bJ
rs215398674					SNP	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	A	A	A	A	G	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss376343693	MGP_WTSI_8_125950178	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:124153017 () rs orientation: forward

Symbol	Name	Function Class
Mela	melanoma antigen	within coordinates
Rr183291	regulatory region 183291	1763 bp distal
Tssr2728	transcription start site region 2728	1195 bp downstream
Tssr83353	transcription start site region 83353	459 bp downstream
Tssr83354	transcription start site region 83354	1280 bp downstream
Tssr83355	transcription start site region 83355	1367 bp downstream
Tssr83356	transcription start site region 83356	1444 bp downstream
Tssr83357	transcription start site region 83357	1559 bp downstream
Tssr83358	transcription start site region 83358	1824 bp downstream