rs215401039 SNP Detail

Summary

• ID
  rs215401039
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:32766810 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGCATGCAC TTACAGCAAA
  GAGCGGAGGG AGAGAAGTGG ACACGGTGGC GGCCAACCAA CAGTCCTGTG CTTGGCACGA
  GGCAAGGACA GCAAGGGACA GAGATTCCAG AGTTTCAAAG ATTAGCCTGC TACAAGGACC
  GAACGGAATT GCCTCTTGAA GTTGCAAAAT GTAGGGAGCC AGAGGAAATG TAGGAGTTTG
  K
  TTTTGGTGCT TCAGACTGCT TTCTTAACAA TGGAAGGAGC CGATGAAATT TGAGCACTTA
  TCTACCAGAC CTCATGCACC ATCCGGTTGG TTATGTGTCC TTGCTTGGTC ATACTCCAGG
  TTTGACAGCA GCAGTTACCT GCGGACACGC ACTCTGGAGC CTGTTGCTGC CACCTACGGG
  TAAAAAGCTG AAGGGAAAAA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss379945608	MGP_WTSI_10_32610620	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs215401039					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss379945608	MGP_WTSI_10_32610620	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:32766810 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1427	CpG island 1427	75 bp distal
Gm66462	predicted gene, 66462	within coordinates
Nkain2	Na+/K+ transporting ATPase interacting 2	352 bp upstream
Rr214428	regulatory region 214428	191 bp proximal
Rr224648	regulatory region 224648	within coordinates
Tssr92885	transcription start site region 92885	993 bp downstream
Tssr97216	transcription start site region 97216	1087 bp upstream
Tssr97217	transcription start site region 97217	895 bp upstream
Tssr97218	transcription start site region 97218	818 bp upstream
Tssr97219	transcription start site region 97219	787 bp upstream
Tssr97220	transcription start site region 97220	642 bp upstream