rs215405393 SNP Detail

Summary

• ID
  rs215405393
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:122825131 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    AGTGTGAAT GTTGTGTGCA TGGATGGATC
  AGCCACGTGG AACCTTATTA ATATGTACAA TTAATATATG TCAGCATGAA AAATGAGAGG
  ACAGAGAAAA GCTGTATGCT ATTGAAATGT ATTGACAGGA AAATTGTGTG GTCAGCTGGG
  K
  GTGGGGATGG TGGTGGTGCT CATCTGGTTA CTATAACAAG AGACCTGGGA GTCTGAAGCT
  AGATTGTGTG TGCTACACTG AGATGATGGC ACGAAGGCAA GCAAAACCCG ACAACAAAGG
  GAAGAGAAAA ATGATCACGA ACAGATTAAT                                 
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321934552	CHEV_6_122798190	CHEVERUD	SCREENING_POP	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs215405393					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:122825131 () rs orientation: forward

Symbol	Name	Function Class
C3ar1	complement component 3a receptor 1	within coordinates
Tssr58709	transcription start site region 58709	196 bp downstream
Tssr58710	transcription start site region 58710	within coordinates
Tssr62965	transcription start site region 62965	1637 bp upstream
Tssr62966	transcription start site region 62966	386 bp upstream
Tssr62967	transcription start site region 62967	341 bp upstream
Tssr62968	transcription start site region 62968	293 bp upstream
Tssr62969	transcription start site region 62969	within coordinates
Tssr62970	transcription start site region 62970	31 bp downstream
Tssr62971	transcription start site region 62971	96 bp downstream
Tssr62972	transcription start site region 62972	198 bp downstream
Tssr62973	transcription start site region 62973	257 bp downstream
Tssr62974	transcription start site region 62974	324 bp downstream
Tssr62975	transcription start site region 62975	435 bp downstream
Tssr62976	transcription start site region 62976	481 bp downstream
Tssr62977	transcription start site region 62977	544 bp downstream
Tssr62978	transcription start site region 62978	621 bp downstream
Tssr62979	transcription start site region 62979	652 bp downstream
Tssr62980	transcription start site region 62980	677 bp downstream
Tssr62981	transcription start site region 62981	696 bp downstream
Tssr62982	transcription start site region 62982	857 bp downstream
Tssr62983	transcription start site region 62983	1314 bp downstream
Tssr62984	transcription start site region 62984	1384 bp downstream
Tssr62985	transcription start site region 62985	1427 bp downstream
Tssr62986	transcription start site region 62986	1738 bp downstream
Tssr62987	transcription start site region 62987	1868 bp downstream
Tssr62988	transcription start site region 62988	1936 bp downstream