rs215413202 SNP Detail

Summary

• ID
  rs215413202
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:59952507 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGCAGCTGT GCAAAGCCAT
  GGCCTACTGA GAGACCCCTG GGTGGACAGT GGACGCAGTG GCCAGACACA GATGAAAAGA
  TGAACCTTCT TCTGGAGGTG TTGGGGAACC AGGGAAGGGT TTCTAAATGT AACATTTATA
  GTGATCCCCT CCTTTCCTAT AAAAGCAATA GGTGTTCATT GTAGAAAATT TTGAAGATGG
  R
  GGAAGGGAGG AAAAAAAGAT GCTAAATGCT CTCTGCATCC CTGCCCTGCA GAGGAAACAT
  CTTGTTAACG CTCTGATAGA AATAATTTCT CTCTTAGTCT GTCTGTCTGT CTGTGAATGC
  AAGCTGCTCT GGTAGTAAAT AGGACACATA TTTAAGAAGC CACTCGCCAT CTACCCTGGG
  GAGGGTGAAT GCAAAGCCAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323323889	CHEV_10_59579433	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs215413202					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:59952507 () rs orientation: forward

Symbol	Name	Function Class
Gm51801	predicted gene, 51801	within coordinates
Gm66809	predicted gene, 66809	914 bp upstream
Rr219869	regulatory region 219869	1494 bp proximal
Spock2	sparc/osteonectin, cwcv and kazal-like domains proteoglycan 2	within coordinates
Tssr93522	transcription start site region 93522	893 bp downstream