rs215421914 SNP Detail

Summary

• ID
  rs215421914
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr10:128658678 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAACACATC AATCCTAAAA
  GTTTTTCGAG TTTTCTCAGG AGGTTCTCAA TGACCTGCCC TCCCTCCCCT GACTATCCTA
  CCTCTAGAGA GAGAACGTGT AGGGTAGATA GCTGTAATAT GAGAGGTGTA TGAAGTATGT
  TTGAAAACCT TAGGATTTTG TTTGTCCTTT TAACCTTTGG GAAGGATCCC AGCTCTCTTG
  R
  TGTCACCCCC AACTCCCTTT TTGGGTCTAT TTTTGTTATT TCCGTGTGTC TGTGTGAGTA
  TATGATGGAT GCATGCTCTT GGAGGTTAGA AGAGGGTGTT GGATCCCCTG GAGCTGGAGT
  TACAGGCAGT TTTGAGCAGC CTGATGTGGG TGCTGAGAGT AGAATAATTT GGGTCCTGAA
  GAGCAGTAAA TGCTCTTCAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323536217	CHEV_10_128259865	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs215421914					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:128658678 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi2421	CpG island 2421			642 bp distal
Ormdl2	ORM1-like 2 (S. cerevisiae)			1180 bp upstream
Rr402366	regulatory region 402366			987 bp downstream
Rr441331	regulatory region 441331			1229 bp distal
Rr441332	regulatory region 441332			902 bp distal
Rr441333	regulatory region 441333			9 bp distal
Rr441334	regulatory region 441334			863 bp distal
Rr441335	regulatory region 441335			545 bp distal
Rr441336	regulatory region 441336			489 bp proximal
Sarnp	SAP domain containing ribonucleoprotein			Intron
				Noncoding-Transcript-Variant
Tssr96458	transcription start site region 96458			1072 bp downstream
Tssr96459	transcription start site region 96459			1036 bp downstream
Tssr96460	transcription start site region 96460			1009 bp downstream
Tssr96461	transcription start site region 96461			896 bp downstream
Tssr99967	transcription start site region 99967			1177 bp upstream