rs215426483 SNP Detail

Summary

• ID
  rs215426483
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:110367348 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAGGAGCAG CATAATGGAA
  AACCAGGCCA TGGAGGCTAA GAAACCGGTC ACTCTGTGGA AGTCTGTGGA AGCCAGCGGC
  GGCAGACACC CAGTGCTAAC TTTGGGAGCT GTGTTCCAGG AAGGAAGGCG TGGTCAGCAG
  GCTGCAGTGC TGGGAAGAGG TGAGCAAGGG TGCACAGAAA GCTCCCGCTG GCCTTGGCAA
  Y
  TCAGAGGTCA TTCCGGACTT TGAGGGGCTG GCATAGAAAC TAGACCGCAG AAGGCTGGGA
  AGCAAGGAAG TGTGTGTGTG TGTGTGTGTG TGTGTGTGTG TGTGTGTGTG TGTGTGTGTG
  TGTGTGTGTG TGTACACGCG CGCGCCCGTG TGTGTTGGGA GGGGCGGGAA GGTGATTCAA
  GGGACCGGTC CAACACCTGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322398776	CHEV_7_117911655	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs215426483					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:110367348 () rs orientation: forward

Symbol	Name	Function Class
Ampd3	adenosine monophosphate deaminase 3	65 bp upstream
B430319F04Rik	RIKEN cDNA B430319F04 gene	within coordinates
Cpgi19579	CpG island 19579	within coordinates
Rr653308	regulatory region 653308	within coordinates
Rr653309	regulatory region 653309	280 bp proximal
Rr653310	regulatory region 653310	781 bp proximal
Tssr68503	transcription start site region 68503	41 bp downstream
Tssr68504	transcription start site region 68504	14 bp downstream
Tssr68505	transcription start site region 68505	within coordinates
Tssr68506	transcription start site region 68506	28 bp upstream
Tssr68507	transcription start site region 68507	474 bp upstream
Tssr68508	transcription start site region 68508	689 bp upstream
Tssr74265	transcription start site region 74265	1160 bp downstream