rs215434825 SNP Detail

Summary

• ID
  rs215434825
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:137639265 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGGGCCCCT GGAAGGGGCC
  TCCCTCACAT CGCTGCTGTC CTTCACGCAC TTCTGGAACA GCCTTAGGGG TAGAGGTTGG
  GGGCTCTGGG CCCCAACTAC CATCGGACCT GTCCTGGGAG CAGATGACAC CTGGGCCCAG
  CCAATTAACA AGGACTTGGT GACCATGGTC TTGTGTGTAG CACTGGCCTT GGATATCCCC
  Y
  TGCCCTTAGG CTGCTTCGGG TACAGCCCCC ATCTGGGTGA AGAGCGTTGT GTCAAACACA
  ATAAAAAGAA GCCCAAAGGC CTGTAGGTTG GTCCTCAGGT GTGTGCCTGC CTGTCCATGA
  ATGCGCGAGC TTTTTGGGGA CCTGAGTCCT CTACTGTGAG TCCCAGTGTA GACTGCTATA
  TTTCTGTGCC TGGCAGAGGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321702662	CHEV_5_138082231	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs215434825					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:137639265 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16844	CpG island 16844	112 bp proximal
Gm20605	predicted gene 20605	within coordinates
Lrch4	leucine-rich repeats and calponin homology (CH) domain containing 4	within coordinates
Rr622927	regulatory region 622927	136 bp proximal
Rr622928	regulatory region 622928	228 bp proximal
Rr622929	regulatory region 622929	439 bp proximal
Rr622930	regulatory region 622930	568 bp proximal
Sap25	sin3 associated polypeptide	470 bp upstream
Tssr49364	transcription start site region 49364	273 bp upstream