rs215439687 SNP Detail

Summary

• ID
  rs215439687
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:124733605 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGGAGGGCGG CCCCCATGCC
  CGGCTCCCCG CGCAGCCCCG ATCGGCTTCT CGCGCTCCTC GCCCGCCCTC CCGCCCGGAA
  CGCGCCGCCC GCGCCCGCCC CCGCCGCACC GCCCGCCTCC GCCCGCACTC GCGGTCCCGG
  CGAGGCCCGC GACCCCCGAC CCTCCCGCCG CTGGTGCCGC GCGCCCCTAG CCCGCCCCGA
  R
  GCCTGCCACC CCGAAACGCG TCCTGGCCCG AGGCCCCGGT CGGGCGCGGG GCTGCGGGCG
  GACGGACAGG CTGGGCGGCG CGTCCGGCGA CTCGCACAGG AAAGCGGACG GCGGAGGGAG
  GGCGCTCGGG AGAGGGGGAT GGGAGCAGGG AGGAAGAGGG AGAAGGAGGG AGCGCGGAGG
  AACGGAGGAG AGAGAGGGGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss369942282	MGP_WTSI_6_124706660	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	A	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs215439687					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	A	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss369942282	MGP_WTSI_6_124706660	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:124733605 () rs orientation: forward

Symbol	Name	Function Class
Atn1	atrophin 1	155 bp upstream
Cpgi17967	CpG island 17967	within coordinates
Gm45234	predicted gene 45234	621 bp upstream
Rr145725	regulatory region 145725	within coordinates
Rr380049	regulatory region 380049	1561 bp downstream
Tssr63141	transcription start site region 63141	279 bp upstream
Tssr63142	transcription start site region 63142	115 bp upstream
Tssr63143	transcription start site region 63143	57 bp downstream
Tssr63144	transcription start site region 63144	184 bp downstream
Tssr63145	transcription start site region 63145	207 bp downstream
Tssr63146	transcription start site region 63146	245 bp downstream
Tssr63147	transcription start site region 63147	320 bp downstream
Tssr63148	transcription start site region 63148	355 bp downstream
Tssr63149	transcription start site region 63149	378 bp downstream
Tssr63150	transcription start site region 63150	597 bp downstream