rs215458626 SNP Detail

Summary

• ID
  rs215458626
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:113282133 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    ctgactgcc cttccaaagg tcctgagttc
  aaatcccagc aaccacactg tggttcacaa ccaccattaa tgagatttga taccctcttc
  ttgtgtgtct gaagacagct acagtgtact tatatataat aataaataaa tttttGGGCC
  R
  GAGCAAGCAA GATCTGAGCA AGCAGGGTTG ATCAGAGCGA Gcagaggtcc taaaattcaa
  tttccaacaa ccacatgaag gttcaggtgt acagctactg tgtactcatc tgtacagcta
  cagtgtactc acatacataa aataaataaa                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321910473	CHEV_6_113255166	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs215458626					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:113282133 () rs orientation: forward

Symbol	Name	Function Class
Brpf1	bromodomain and PHD finger containing, 1	1965 bp upstream
Cpgi17838	CpG island 17838	1144 bp proximal
Cpne9	copine family member IX	within coordinates
Gm15492	predicted gene 15492	within coordinates
Gm43935	predicted gene, 43935	453 bp downstream
Gm67816	predicted gene, 67816	449 bp downstream
Rr399829	regulatory region 399829	1200 bp upstream
Rr636483	regulatory region 636483	363 bp proximal
Rr636484	regulatory region 636484	1475 bp proximal
Tssr58189	transcription start site region 58189	1778 bp upstream
Tssr58190	transcription start site region 58190	1988 bp upstream