rs215482691 SNP Detail

Summary

• ID
  rs215482691
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:68923805 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTAGACATT TGTTGCCAAT
  GAGAATGTCT TATTAGCCAG GCAGTAGTTG CACTTTAATT CCAGGACTTG GGAGGCAGCA
  GCAGGCAGAT CTCAGAGCTT GAGACCAGCC TGGTTTACAG ACTGAGTTCC AGGACAGTCA
  GGGCTACACT GGACAATCCC TGTCTCAAAA ACAAAACGGG GTGGGGGGGG GGTGGGGGGG
  T
  GGGGGGGGCT GTCTTATTTG CAGAACAGCT GAATTTACTA AGTTGAATAC TAATGTTCAT
  ACTTAATCAA ACCCACTATC TTTATATTAG CCTTTGCGTG ACATGCTTTT ATTTAGTGTT
  TAATATTTCA TGTTGGTTTT ACATATGAAA TGTTTTACAT CTTTATTTAA TGTTTGTAGT
  TAAATAGAGT GAAAATGGTA                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S5/SvEvBrd	BALB/cByJ	C3H/HeJ	C57BL/6J	CE/J	CZECHII/EiJ	MA/MyJ	NON/ShiLtJ	RIIIS/J	SPRET/EiJ	ST/bJ	SWR/J
ss358313481	MGP_WTSI_3_68820394	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S5/SvEvBrd	BALB/cByJ	C3H/HeJ	C57BL/6J	CE/J	CZECHII/EiJ	MA/MyJ	NON/ShiLtJ	RIIIS/J	SPRET/EiJ	ST/bJ	SWR/J
rs215482691					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss358313481	MGP_WTSI_3_68820394	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:68923805 () rs orientation: forward

Symbol	Name	Function Class
Smc4	structural maintenance of chromosomes 4	within coordinates
Tssr29518	transcription start site region 29518	364 bp downstream
Tssr29519	transcription start site region 29519	202 bp upstream
Tssr29520	transcription start site region 29520	220 bp upstream