rs215483027 SNP Detail

Summary

• ID
  rs215483027
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:123300920 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTTTTAAAT AGGAATGAAG
  GCCCAGAGAC ATCTGGTGGG AATTTGGATC CCAATAATCT CTGTGCAGAG GAATCACCCC
  CTGGTTCCTA AGCTTCCCTA AATAAGGCCT ATCATACTCT TGAGTGTGAG TCTCAGTACC
  TCAAATCCCA GACACAAAAG CCTCTAAGGT CACAAGTATC CCCTCAGCAC CTGTCACAAC
  R
  CACCCCCTAG CTGGTGTTAC ATACTTGGCT TCTGGAGATT TGAAGTTGAA TGGCACACAC
  TAGAAGGCTT GGAGAGCAGC AAGCAAAAGA TACTTTTCAT TAAGGGCAAC CGTCTGTGGC
  TTATTAATCA CTCATGTTCC AAGCCAACAT TTATCTTGCA CCTTTGTAAC AATCAAACCT
  ATCTTCTTTG GAAGCCTAGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320920388	CHEV_3_123210189	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs215483027					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:123300920 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13780	CpG island 13780	667 bp proximal
Prss12	serine protease 12 neurotrypsin (motopsin)	674 bp downstream
Rr397991	regulatory region 397991	237 bp downstream
Rr584523	regulatory region 584523	352 bp distal
Rr584524	regulatory region 584524	217 bp distal
Rr584525	regulatory region 584525	1103 bp proximal
Rr584526	regulatory region 584526	1648 bp proximal
Snhg8	small nucleolar RNA host gene 8	281 bp downstream
Snora24	small nucleolar RNA, H/ACA box 24	666 bp downstream
Tssr31551	transcription start site region 31551	1279 bp upstream
Tssr31552	transcription start site region 31552	1317 bp upstream
Tssr35502	transcription start site region 35502	1059 bp downstream
Tssr35503	transcription start site region 35503	1644 bp downstream