rs215489777 SNP Detail

Summary

• ID
  rs215489777
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:99772272 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTCAGCAAA TGAATTTTGC
  TTGAAGTTTG GTTACAATGA AGGCATTGAG AGCTAAGTGA AAATACTGCT GAGAAAGAAG
  TAGAGCTCTG ATGTGCCCAC TGTGACTTAC CATCACTGAA TGGGCAGGGG CCATGTTAGA
  CTTTGTATTT AAATATTCTC GTGTAATCTC GTCAACAATC TAGGATGTAA ATATTACCTG
  Y
  ATACTAATAT ATAGATGTCA GATAACTTGA GTCTTTATCT CAGTTTTATA GAAACTGTCC
  AGAGTTAGGT AGTTTGCTCC AAGCCACATA CATAGCAAGT ATGTTTCCGT CCAGGTATGC
  TAAAATAATC GCCCACCGTC TCAAAGCTGG GCTTGCTTTG GTGGTAGCAT TGGGCTGCCT
  TTTGTTCTCA TCTTGGTTTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss372511393	MGP_WTSI_7_107271575	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs215489777					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss372511393	MGP_WTSI_7_107271575	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:99772272 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19477	CpG island 19477	1223 bp distal
Pold3	polymerase (DNA-directed), delta 3, accessory subunit	1563 bp upstream
Rr400466	regulatory region 400466	1334 bp downstream
Rr652064	regulatory region 652064	1610 bp distal
Rr652065	regulatory region 652065	1010 bp distal
Rr652066	regulatory region 652066	479 bp proximal
Rr652067	regulatory region 652067	601 bp proximal
Rr652068	regulatory region 652068	1198 bp proximal
Rr652069	regulatory region 652069	1331 bp proximal
Tssr73731	transcription start site region 73731	1971 bp upstream
Tssr73732	transcription start site region 73732	1623 bp upstream
Tssr73733	transcription start site region 73733	1554 bp upstream
Tssr73734	transcription start site region 73734	1541 bp upstream