rs215507247 SNP Detail

Summary

• ID
  rs215507247
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:40489748 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTGATCCCA TCTCCGGTGT
  TGACATACGC CGGCGCCTAG GCTTTGCAGT CCAGAGCTGC AGTTTGCAGT GGAGCTAAGC
  GGTGTGCGGC TTTAATTCCA CGTCAGATCA ACTTTGATCA ATATCCCCCT ACCGGCCCAA
  TTGGAAGAAC CCAATTCACC GGAGCTGAGC CTTTGAGGCT TTTAGCTCTT TTCTTCTTCC
  Y
  CACTCTTTAG ATCCACCATC TTCGAGGGCG GGGGAACCCT TTGGTTTTCT TTATAATTTC
  TTTCTTATTT CTTTATCTCG TCCCTGTTTT GTTTTGTTTT GTTTTTTTAC GATTTTGGTT
  TTGCTCCGGT TTTAATTCTC TCTGTTTCTG TCTCCCTGTG TCTCTATCTC TGTGCCGGTC
  TCTGTCTCTG CCTGTCTCTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss403322480	MGP_WTSI_X_38754048	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs215507247					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss403322480	MGP_WTSI_X_38754048	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:40489748 () rs orientation: forward

Symbol	Name	Function Class
Gria3	glutamate receptor, ionotropic, AMPA3 (alpha 3)	within coordinates
Rr394967	regulatory region 394967	582 bp upstream
Rr690837	regulatory region 690837	within coordinates
Rr690838	regulatory region 690838	167 bp proximal
Tssr160796	transcription start site region 160796	268 bp downstream
Tssr160797	transcription start site region 160797	203 bp downstream
Tssr160798	transcription start site region 160798	171 bp downstream
Tssr160799	transcription start site region 160799	142 bp downstream
Tssr160800	transcription start site region 160800	38 bp downstream
Tssr160801	transcription start site region 160801	within coordinates
Tssr160802	transcription start site region 160802	31 bp upstream
Tssr160803	transcription start site region 160803	287 bp upstream
Tssr160804	transcription start site region 160804	518 bp upstream
Tssr160805	transcription start site region 160805	605 bp upstream
Tssr160806	transcription start site region 160806	743 bp upstream