rs215509581 SNP Detail

Summary

• ID
  rs215509581
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:11889858 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTGATAAAC AGCTTCACCC
  CAGGGAGCAG TAGCTCCCAG GATAATTAAT TTCCTTCATA TTATGCAGCC ACCAGCTTTT
  ATTTCTGTAA AAGTTGCCAT GTTTGCAAGA GCTGCTTCTT ATACACATCC TCTTGGTTAT
  TAAATGCCAA CCACATTTGT TTACAAATAA AACCAAGTTA ATGAAATACT GCATCTACAT
  Y
  AGCAAGAGCT GAGAGCACTG CGGCCTCCGC AGGCTCCAGA GCCTTGTGCT GGCCTTCAGT
  GGTGTACCTC AGGGAGGGTC CCCACAGAGC ATTGCAGTTA GAAAGGGGAC CATCTCCAGC
  AGCTCACTTC CCAGCCCTGA CCTACTTGGG ATTCTTGCAA CACCTGGAAA ATACTGAAAC
  ATATGGCAGT TTCCAGCAAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322494107	CHEV_8_11839858	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs215509581					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:11889858 () rs orientation: forward

Symbol	Name	Function Class
Gm15875	predicted gene 15875	within coordinates
Rr659647	regulatory region 659647	1373 bp proximal
Tex29	testis expressed 29	630 bp upstream
Tssr76253	transcription start site region 76253	643 bp upstream
Tssr76254	transcription start site region 76254	656 bp upstream
Tssr76255	transcription start site region 76255	710 bp upstream