rs215514425 SNP Detail

Summary

• ID
  rs215514425
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:116387260 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATAGACTTT CTATATTAAG
  TATAGACTTA CTATATTATT AAGTAGAATA ATAGTATGAC TTGCTTCCTA AGGTTTGTGA
  AAATTGAATT TTTAAAAGCA AAATAACGTT TAGTACTAGC CCTACAGCCA AAGCTGACCA
  AGTATTTACT CTTAATTTTT CTCAATTGTT TATTTCAATT TATTTCAGAA TGTTCATGAA
  S
  ATACGCACAC TGAATTTTAG AGAAAGTTAA GGAATTTTCA GTATTAAAAA AAACAACATT
  ATTTCATGTA TAGACTTTTA AATTAAATTC CAGTGTGATT CTTTGATGGA GACCAGCTAG
  TTGGGAGGCT AAGGCAGGAG AATTCCTGGG ATCAGATGTT CAAGACCAAT ATGAGCAATT
  CAGCAAGATC CCCATCTCAA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320895794	CHEV_3_116296529	CHEVERUD	SCREENING_POP	f	SNP	G	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs215514425					SNP	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:116387260 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13737	CpG island 13737	865 bp proximal
Rr397965	regulatory region 397965	1152 bp upstream
Rr583746	regulatory region 583746	839 bp proximal
Rr583747	regulatory region 583747	1136 bp proximal
Rr583748	regulatory region 583748	1217 bp proximal
Rr583749	regulatory region 583749	1410 bp proximal
Rr583750	regulatory region 583750	1578 bp proximal
Sass6	SAS-6 centriolar assembly protein	1371 bp upstream
Trmt13	tRNA methyltransferase 13	within coordinates
Tssr31360	transcription start site region 31360	1348 bp upstream
Tssr35316	transcription start site region 35316	1205 bp downstream
Tssr35317	transcription start site region 35317	1237 bp downstream