rs215519230 SNP Detail

Summary

• ID
  rs215519230
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:117805480 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    gcaGGTTGA CAGTGGTGGA TTCTTATGCC
  AAGGTTCACA TCTCATCCAT TCAGGGAACT ATAGACAGTT CTTATTCCCT TAAAGAAACA
  TTTTTAGTGG Attcgttttt attttatgtg cctggatgtt ttacctgtgt gcgtgcgcgc
  R
  cacacacaca cacacacaca cacacacaca caaaacctgc atgaagtgtc agcagaggcc
  agatgaggac actgaatcct gtggtggttt gaataagaat gatccccaca gAACCAACCA
  AGCAGCAGAA CTTGGCAGCT TGCTTATAAT                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324203260	CHEV_12_119080218	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs215519230					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:117805480 () rs orientation: forward

Symbol	Name	Function Class
Cdca7l	cell division cycle associated 7 like	1729 bp upstream
Cpgi5229	CpG island 5229	1510 bp proximal
Rr265167	regulatory region 265167	1320 bp proximal
Tssr3984	transcription start site region 3984	1695 bp upstream
Tssr115551	transcription start site region 115551	1744 bp upstream
Tssr115552	transcription start site region 115552	1949 bp upstream