rs215535902 SNP Detail

Summary

• ID
  rs215535902
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:77737657 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCTCTTCTC CACTGGGATG
  TGCAAGCGAC TGTCCTTCCT CACGTTGCAG GCAGTCATCC AACACAAACT CTTGTGTCTT
  CGCCTGCTGA AGAGCCTAGT GATCTCAGTT CTACAAGAAA AAAAGAGGAA AGGGAGCTGA
  GGGTGACCGC CACTGCACAT TTCAATTCAA TTTGGGAGGA CGGGATCAGG GAGGAAAGGA
  R
  TCGTAGGCAT ATCAGGTTTG AGGCAGGGCT CCGGGCTATC AAACATACCT GCTTTGTAAC
  TTACTCTAGA AGATTCCCAA GGCCACCCAG AGAAGGCACC TCCCAGCTAA GTAAGACATC
  TAGGGCTGAC CGATGGCTGG AGACTGGCCC TAGCTAGGCA GTTACAGAAC CCTGTCCTAG
  CCTCTGGTCA CCCACCCATA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss380977296	MGP_WTSI_10_77364568	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs215535902					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss380977296	MGP_WTSI_10_77364568	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:77737657 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1765	CpG island 1765	94 bp proximal
Gm53590	predicted gene, 53590	1661 bp upstream
Gm66732	predicted gene, 66732	1603 bp upstream
Gm66819	predicted gene, 66819	553 bp upstream
Lrrc3	leucine rich repeat containing 3	within coordinates
Rr434595	regulatory region 434595	1266 bp distal
Rr434596	regulatory region 434596	63 bp proximal
Rr434597	regulatory region 434597	564 bp proximal
Rr434598	regulatory region 434598	703 bp proximal
Rr434599	regulatory region 434599	1685 bp proximal
Tssr98252	transcription start site region 98252	605 bp downstream
Tssr98253	transcription start site region 98253	644 bp downstream