rs215541007 SNP Detail

Summary

• ID
  rs215541007
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:161575825 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TATGACTGA TTATCCTTTT ACAAAATTTC
  CAGCCCCAGG AATCAAATCT GGTTCTCTCA CCGAGCTTCC TAGTGTCAGG AAAATCAACC
  ACTGGCTATC AGTACAGGTT CCTCTCGAAC TCCTCCAGCT CTGAGTCTCC ATTCCTGAAG
  Y
  GGGATCTCAA CCCTTGAAAC TGGTCTGGTA TCCGCCAAAG ACTGAGCCTG AGTAATGCCT
  ACAATTGCCA CTAGGTAGCA TCAGTGAGCC AGAGGAGCAT TCAGGGTTGG AGAGGAAAAA
  AGGAAACCGA AGAAAAGAGA TCGAGGTgat                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320081475	CHEV_1_163678387	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs215541007					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:161575825 () rs orientation: forward

Symbol	Name	Function Class
Gm5049	predicted gene 5049	611 bp downstream
Gm70711	predicted gene, 70711	109 bp upstream
Gm70716	predicted gene, 70716	1939 bp downstream
Rr396465	regulatory region 396465	within coordinates
Rr421832	regulatory region 421832	within coordinates
Rr421833	regulatory region 421833	510 bp proximal
Tssr9696	transcription start site region 9696	705 bp downstream