rs215556388 SNP Detail

Summary

• ID
  rs215556388
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:76376754 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCTTG TGTTCCTTTG CAAGACACTA
  S
  TCTTAAATAC TGTTGTTTCC TGTTT                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325699779	CHEV_18_76403337	CHEVERUD	SCREENING_POP	f	SNP	G	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs215556388					SNP	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:76376754 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10251	CpG island 10251	1045 bp distal
Rr540992	regulatory region 540992	1972 bp distal
Rr540993	regulatory region 540993	884 bp distal
Smad2	SMAD family member 2	within coordinates
Tssr151992	transcription start site region 151992	1942 bp downstream
Tssr151993	transcription start site region 151993	1724 bp downstream
Tssr151994	transcription start site region 151994	1523 bp downstream