rs215560319 SNP Detail

Summary

• ID
  rs215560319
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:44060081 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTCCCATCC CGTTCCCCTG
  CCCCCCTCCA GGTGGCCATG GCCTGTCCCT ACTTCTCTAC TCTCTGCCAT TCTCTGCCTC
  TACTACCCTC TTAACTCCCC TCCCCGTGCC CTAAATAAAC TCTATTCTAT ACTATATTGG
  TGTGTGTCTG GTCCCTCAGG GGGAGGGGAT GCCTTGGCAA TGGGCCCGCT GAGGCACCCC
  S
  TTCCCCAACA TTGTGCCAGA ACATATTCTT ATAGCTCTTT CTCTTTTTAT GATCACAACA
  CCCTTCCCCT GCCAAAAAAA AGCAGGTCGT GGAAGCACAT GCCTGAAATC CCAGCCGGGA
  AGTGGAGGCA GGAAGAGTGA GTTTCAGGCC AGCCTGTCTC AGAAACAAAA CAGAAAGAGA
  AAAAGAAGCT GCAGATAGAG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss402544354	MGP_WTSI_19_44146132	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs215560319					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss402544354	MGP_WTSI_19_44146132	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:44060081 () rs orientation: forward

Symbol	Name	Function Class
Chuk	conserved helix-loop-helix ubiquitous kinase	1693 bp downstream
Cpgi10883	CpG island 10883	1468 bp distal
Erlin1	ER lipid raft associated 1	1857 bp upstream
Gm59010	predicted gene, 59010	within coordinates
Rr548150	regulatory region 548150	1772 bp distal
Rr548151	regulatory region 548151	1381 bp distal
Rr548152	regulatory region 548152	1144 bp distal
Tssr159430	transcription start site region 159430	1967 bp upstream
Tssr159431	transcription start site region 159431	1934 bp upstream
Tssr159432	transcription start site region 159432	1855 bp upstream