rs215562132 SNP Detail

Summary

• ID
  rs215562132
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:141388519 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGCAGCTGT CACAGGGCCT
  GAGTGTGTGG CAGGGATGGT GCGGGCAGTG TAGGTCTATT CTCTCACGGA ACTGAATTTC
  CATACTGCAT TATGAGCAGA GTCTGACGTC TGACTGGTGA CGTCACCGGA GGCTCCGCTG
  GCTGCTAGGA TCCAGAATCC AAAGCTCGGC CTGGGTCTGT GTGCATTGCT GGCCTCTGTG
  Y
  GAGGCTGTGT GGCTTTTCCA GGGTGCACAT TCTAGCCACC TCTAGCAGAA CCCTTGATAC
  TCACCCCCAG AAAACCACCT GGGGGCGGGG CACTTCTTTG GAGGATGTTC CTGCTAGCCT
  GGATGCCGCA CCGCGCAGCC TTCTTTCTCT GAGAAGACTA TCAGTCTGCC AAGGCTTAGT
  GAGGGCCTCC CAGTCTCTAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321388817	CHEV_4_141217123	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs215562132					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:141388519 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15240	CpG island 15240	1976 bp proximal
Gm70264	predicted gene, 70264	170 bp upstream
Plekhm2	pleckstrin homology domain containing, family M (with RUN domain) member 2	within coordinates
Rr603849	regulatory region 603849	1254 bp distal