rs215563531 SNP Detail

Summary

• ID
  rs215563531
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:26867133 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATTCCGGGG AGGGCTGTGT
  GGATAGGGTT ATTTGAATGC CCGACCCTTT CCACCAACTC CAGGGCCTAA CAAATGGGCA
  ATAAGTGGGC TTGGATACTT GCTGACATTT TGTGAGAGCA GCTGAAGCTG TCCTGAGGGG
  GGCTGCACCT GTCTCCAGAA GGCTATGGCT ATAAAGACAT CAGGGTACAT TAAGTATGAC
  Y
  AGGAGTCCGG GTTGCACAAG AACCACAGTG GCACATGGCG AAGAATGTTC GTGTTCGCAG
  GCACACAGAC ACACACAAAG AAACAAATCT CCATCAGTGC ACACACAAAC CTCAGGAGCA
  CGTGTTTTTA GGAACACAGT GAGCCACCGT CCTAGTTTGC AGACATGAGG TGGTGTACAC
  TAAGTCAAAC CAGGCACAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss370831981	MGP_WTSI_7_27952727	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs215563531					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss370831981	MGP_WTSI_7_27952727	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:26867133 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18626	CpG island 18626	529 bp distal
Egln2	egl-9 family hypoxia-inducible factor 2	906 bp upstream
Gm21983	predicted gene 21983	722 bp downstream
Rab4b	RAB4B, member RAS oncogene family	725 bp downstream
Rr400185	regulatory region 400185	332 bp downstream
Tssr2152	transcription start site region 2152	1157 bp upstream
Tssr71351	transcription start site region 71351	1315 bp upstream
Tssr71352	transcription start site region 71352	1241 bp upstream
Tssr71353	transcription start site region 71353	1186 bp upstream
Tssr71354	transcription start site region 71354	984 bp upstream
Tssr71355	transcription start site region 71355	943 bp upstream
Tssr71356	transcription start site region 71356	977 bp downstream
Tssr71357	transcription start site region 71357	1020 bp downstream