rs215578119 SNP Detail

Summary

• ID
  rs215578119
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:155926189 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGTTACAGA GGATCGTGAG
  TGTGTCCCTT CCTCTCCTTC GCTATTTCCA TCCCTATCCT CCTTACCCCC AATCTTCCCC
  CTCCTCACCT CTGCGAGGTG ATCTGACTGC CTTTCTCAAC GCATCCGCAG CCCTATTAAG
  TCGCGCATAC TGGGACGGTG AGAAGGAAGT GTTGGTGGTG GCCCATGGCG CGCCGGCACT
  S
  ATGACCTGCA TCAACCGTGC GCACGTGTGG ACTGACCGCC ATTTAGAGGA GGCGCAGCAG
  GTGGTCCATT GGGACCGACA GCTACCTGGG GTGTCACACG ACCGCGCCGA CCGCCTGCTT
  GACCTGTATG CATCTGGCGA GCGCCGCGCC TATGGGCCAC CCTTCCTGCG TGATCGCGTG
  TCAGTGAACA CCAACGCTTT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss363804861	MGP_WTSI_4_155215841	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs215578119					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss363804861	MGP_WTSI_4_155215841	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:155926189 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15490	CpG island 15490	within coordinates
Gm68629	predicted gene, 68629	within coordinates
Mxra8	matrix-remodelling associated 8	within coordinates
Mxra8os	matrix-remodelling associated 8, opposite strand	1554 bp upstream
Rr398927	regulatory region 398927	248 bp downstream
Rr606589	regulatory region 606589	1996 bp distal
Rr606590	regulatory region 606590	1064 bp distal
Rr606591	regulatory region 606591	627 bp distal
Rr606592	regulatory region 606592	121 bp distal
Rr606593	regulatory region 606593	564 bp distal
Tssr40726	transcription start site region 40726	1970 bp downstream
Tssr40727	transcription start site region 40727	1908 bp downstream
Tssr40728	transcription start site region 40728	1892 bp downstream
Tssr40729	transcription start site region 40729	624 bp downstream
Tssr40730	transcription start site region 40730	594 bp downstream
Tssr40731	transcription start site region 40731	565 bp downstream
Tssr40732	transcription start site region 40732	557 bp downstream
Tssr40733	transcription start site region 40733	256 bp downstream
Tssr40734	transcription start site region 40734	1319 bp upstream
Tssr44980	transcription start site region 44980	677 bp upstream
Tssr44981	transcription start site region 44981	628 bp upstream