rs215580302 SNP Detail

Summary

• ID
  rs215580302
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:57389216 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTACATGAT GAGTTGGAGG
  CCAGCCTGTG CTACATGAGA TTCAGTAGTT AATAGATAAC AATGAAAAGA CTGGAAGAAT
  AATGCTAGCA CTATTGTTAT TTTACTGATT TAATTTACTT TTGGGGACTG TGGTGATTAG
  TTTTATTTTA TTTTATTCAT TCATTCATTC ATTCACTCAT TTATTTATTT TAATAGCTTT
  K
  TTCTAGCTGG ATGTGGTAGT GTGTACCTTT AAACTCAGCA CTGGGGAGGG GGAGCACAAG
  GCCAGCCTGT TTACACAGTG AGACTTAAAA ACCAACCAAC CAACCAACCA ACCAACCAAC
  CAACCAACCA ACCAACCAAA AAAGCTCTAT TTTTATGTGT GTGTGCATGC AGATAAGTAT
  ATGTGCCCCT ACAGACCAGA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss398570174	MGP_WTSI_17_57221639	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G	T	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs215580302					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G	T	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss398570174	MGP_WTSI_17_57221639	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:57389216 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9393	CpG island 9393	376 bp distal
Gm56907	predicted gene, 56907	within coordinates
Rr529268	regulatory region 529268	1933 bp distal
Tssr5182	transcription start site region 5182	1972 bp downstream
Tssr145372	transcription start site region 145372	1931 bp downstream
Tssr145373	transcription start site region 145373	1611 bp downstream
Tssr145374	transcription start site region 145374	1495 bp downstream
Tssr148882	transcription start site region 148882	1801 bp upstream
Tssr148883	transcription start site region 148883	1708 bp upstream
Tssr148884	transcription start site region 148884	1639 bp upstream
Tssr148885	transcription start site region 148885	1591 bp upstream
Tssr148886	transcription start site region 148886	1570 bp upstream
Tssr148887	transcription start site region 148887	1554 bp upstream
Tssr148888	transcription start site region 148888	1511 bp upstream
Tssr148889	transcription start site region 148889	1487 bp upstream
Tssr148890	transcription start site region 148890	1386 bp upstream
Tssr148891	transcription start site region 148891	1266 bp upstream
Tssr148892	transcription start site region 148892	1247 bp upstream
Tssr148893	transcription start site region 148893	1034 bp upstream
Tssr148894	transcription start site region 148894	962 bp upstream
Tssr148895	transcription start site region 148895	558 bp upstream
Tssr148896	transcription start site region 148896	491 bp upstream
Tubb4a	tubulin, beta 4A class IVA	within coordinates