rs215583109 SNP Detail

Summary

• ID
  rs215583109
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:4006782 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAGGAAAAA CCAGCTCTAG
  AAGAATGGTG CAGGGGTGGA GCAGAGAGGA GAAAGAGATT CTTGAAGGAA GACTTTCACT
  TCCAAATCCT CCCTTTCAAA AATAGAGGTT TGGCTCCCGT CTTTATTTTC TGTCATATTC
  ATCTTAAAAT GCAAATGTTC ATCAGGGGTA ACAGACACTT AAGTCATTTA CATCTTTTTT
  W
  AAATTATTAC ATTTTATTTT ATTTTATTTT TTTCAGGTCA GGGTATTTCT GTGTAACCCT
  AGCTGTTCTG GAATTTTTTC TGTAGACCAG GCTGGTCTTG AACTCAGAGA TCCTCCTGCC
  TCTATTTCCT GGGTGCTGGG ATTAAAGGTA TGAGCCTGGG TATTTACATC TTACTATGAA
  CTAATTTTTC TAATCTAATT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323873016	CHEV_12_3956782	CHEVERUD	SCREENING_POP	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs215583109					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:4006782 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4369	CpG island 4369	1818 bp distal
Pomc	pro-opiomelanocortin-alpha	within coordinates
Rr366691	regulatory region 366691	1750 bp downstream
Rr462232	regulatory region 462232	1064 bp distal
Rr462233	regulatory region 462233	110 bp distal
Rr462234	regulatory region 462234	223 bp distal
Tssr112541	transcription start site region 112541	1825 bp downstream