rs215587936 SNP Detail

Summary

• ID
  rs215587936
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:192343369 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCAGTAAAG CTCGATTTTC
  CCACTTGCTA TTTGTCTTTC CAGTGGCTTC ATCCTCGGAA GTAAGAACTT GGTAAATGTG
  GTGGATAATT TTGGTTGTCA CCCTTGAGAA GATTCATCAG ATCCCATGAG CACATCTGTA
  GAGCATCTTC TTGATTGCTG ATGGCTATAG GTAGGGGTGC TTAGCCTACT ATGGGCAGTA
  S
  CATCCCTTGA CAGGTCAGCC TGGGCTATAT AAGAAATGAC CAAGCCAGTA AGACGTGTTC
  CTCTGTACTC TCTGCTTCAG TTCCTGCCTC CAGGTTCCTG CTTCTCTTCC TTTGATGGTG
  GAACTGCAAA CTTAAAAAAA TCCTTTCCTT TGCTTTTGGA TGGTGTTTTA TCACAGCAGC
  ATAAAGCAAA CTAGGACAAC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320199408	CHEV_1_194484943	CHEVERUD	SCREENING_POP	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs215587936					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:192343369 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Hhat	hedgehog acyltransferase			Intron
				Noncoding-Transcript-Variant
Rr426372	regulatory region 426372			625 bp distal
Rr426373	regulatory region 426373			503 bp proximal
Rr426374	regulatory region 426374			1911 bp proximal