rs215595490 SNP Detail

Summary

• ID
  rs215595490
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:117582458 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCGCTGCGC CGCGAGGTAA
  TAGGCCGCCG CCCTCCGAGC GGGTCCGCCA CGGCTCCTCC CAGCCCCGCC CCCGCGCAGC
  CACGTGATTC CGCCGCGCAG GCGCGCTCGG CGCTCCGCTG GGTTGCTTAA CTCGGCTGGA
  GGGAAGCCCT TGGCTCCCAG GGAAGATTAG TTTCTGTGGC CGATTCCCCG ACTTACTGGG
  M
  GGCGCAGATT CCCCGCCAGT TTTACTCTCC ACGTTGCTGA GCTGTTTTAA TCCTCTGAAG
  GGGGGCAGAG CATTACTTAC TGAAAGCATA TTTTAAAATA TCTTTAAAAG TCTAAACAGG
  CCGGGCGGTG GTGGCGCACG CCTTTAATTC CAGCACTCAG GAGGCAGAGG CAGGCGGATT
  TCTGAGTTCG AGGCCAGCCT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323499177	CHEV_10_117183609	CHEVERUD	SCREENING_POP	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs215595490					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:117582458 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2238	CpG island 2238	768 bp distal
Cpgi2239	CpG island 2239	within coordinates
Gm66856	predicted gene, 66856	within coordinates
Rr439610	regulatory region 439610	590 bp distal
Rr439611	regulatory region 439611	62 bp distal
Rr439612	regulatory region 439612	within coordinates
Slc35e3	solute carrier family 35, member E3	195 bp upstream
Tssr99471	transcription start site region 99471	203 bp upstream
Tssr99472	transcription start site region 99472	135 bp upstream