rs215598890 SNP Detail

Summary

• ID
  rs215598890
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:148783673 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    ATTAAAAAT GATTTTTATA TACGTATCTG
  TCGTATAGAC ATTTATAGAA GCAGAATTTT GGATATGTCA CAACCATACA CATTATCTGT
  TAATATATCA TGATAAAAAT AATGTTTAGA AAATGAGCGT CTCAGTGAAC ATGAAGGCCT
  R
  GCGCTACATG TGATTTGAAT TGTGTTGCCA ACGGACTTAG GGCTGAGATT GCAATGTACT
  CAAACCTCTT AATTCCTGTA GGCAAACTTG CAATTTTAAA AGTTATTTAA TCTCAAATAT
  CAAAAGTGTC AACCGATACT CTATGAAAGT                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321017239	CHEV_3_148741001	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs215598890					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:148783673 () rs orientation: forward

Symbol	Name	Function Class
Rr587252	regulatory region 587252	1810 bp distal
Rr587253	regulatory region 587253	504 bp distal
Rr587254	regulatory region 587254	918 bp proximal
Tssr36091	transcription start site region 36091	937 bp upstream
Tssr36092	transcription start site region 36092	909 bp upstream
Tssr36093	transcription start site region 36093	877 bp upstream
Tssr36094	transcription start site region 36094	844 bp upstream
Tssr36095	transcription start site region 36095	771 bp upstream
Tssr36096	transcription start site region 36096	674 bp upstream