rs215615514 SNP Detail

Summary

• ID
  rs215615514
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:156078190 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGGTCCAGC AGCATCTCTG
  CCTCGGTTTC CCCTTTGGTA AAACGTGCGC CATGAGTTCT AGTAGTGTGA GCTGGAAATG
  GAAGGCCTGG GTAAAACCTT CCTGCCCAGC CCGGGTTGGT GGGCGTTCTT CTCCGGTACT
  GTTCGGCGTA GTTCTTAAAC CGACATTGCT TTTACTTACT GTTGTTGTTG TTGACGTTTT
  W
  CGAGACGAGC GAGCTTTCTC CGTGTAGCTC GGGCTGTGCT GGAGCTCACT CTGTAGACCA
  GAGTGGCTGC ACTGGAACTC AGAGATCGCC TGCCTTTGCC TCCTTAGTGC TAGAATTAAA
  GGCTTTTTCT TTTCTTTTAC TTAACTTTTT TTTTTTTCTT CCTGCCAGGC TTTATTTCTT
  TACATTCCTA TTTTTGTGTT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss363809063	MGP_WTSI_4_155367842	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	A	T	T	A	T	T	T	T	A	T	T	A	A	A	A	T	A	T	T	T	T	A	T	T	T	T	A	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs215615514					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	A	T	T	A	T	T	T	T	A	T	T	A	A	A	A	T	A	T	T	T	T	A	T	T	T	T	A	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss363809063	MGP_WTSI_4_155367842	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:156078190 () rs orientation: forward

Symbol	Name	Function Class
B3galt6	UDP-Gal:betaGal beta 1,3-galactosyltransferase, polypeptide 6	1084 bp upstream
Cpgi15496	CpG island 15496	within coordinates
Rr377473	regulatory region 377473	within coordinates
Rr606630	regulatory region 606630	1138 bp distal
Rr606631	regulatory region 606631	346 bp distal
Rr606632	regulatory region 606632	1035 bp distal
Rr606633	regulatory region 606633	761 bp distal
Rr606634	regulatory region 606634	459 bp distal
Rr606635	regulatory region 606635	within coordinates
Sdf4	stromal cell derived factor 4	Intron
Tssr1404	transcription start site region 1404	787 bp downstream
Tssr40748	transcription start site region 40748	1320 bp downstream
Tssr40749	transcription start site region 40749	546 bp downstream
Tssr40750	transcription start site region 40750	437 bp downstream
Tssr40751	transcription start site region 40751	417 bp downstream
Tssr40752	transcription start site region 40752	278 bp downstream
Tssr44987	transcription start site region 44987	1391 bp upstream
Tssr44988	transcription start site region 44988	1059 bp upstream