rs215619498 SNP Detail

Summary

• ID
  rs215619498
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:113364209 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTTCTCCTA AGGCTGAGAA
  GTACACAAGG CCTTCCACAA GGCTTATTCC TCAGTGACTT CTGAAAGATA GCATCCAGTT
  GACGGTGGTA GTACAAGTCA CACCATAGGA CTGAGGGATC AGTGGTTAGT GGATGGGGTG
  AGGAATGGAA TTTCCAGTAT TGATGGCTCT ATTGGGCTGT TTGTAATCTA AGAGGAAGAG
  R
  AAAGGCGAGT CTGGAAAGTG GACGAAACTG CTTGTTAGAT GCAGGCACTT GAGAAGTATT
  CAAGGCCCTG GGAAGAATAA AGGAGAATAA TGCAGCCTTT CAGGGCATTG GGGGCAGGGG
  AGGCTTGTGT GCAGCAATGG CATTCAGGTA TCTTCAAGTA GGGTGTCTCC TGAGGCAAAG
  TATTCCACAT GAGAGATTTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss372783369	MGP_WTSI_7_120908486	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs215619498					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss372783369	MGP_WTSI_7_120908486	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:113364209 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19594	CpG island 19594	660 bp proximal
Rr653859	regulatory region 653859	598 bp proximal
Spon1	spondin 1, (f-spondin) extracellular matrix protein	1026 bp upstream
Tssr68625	transcription start site region 68625	803 bp upstream
Tssr68626	transcription start site region 68626	865 bp upstream
Tssr68627	transcription start site region 68627	934 bp upstream
Tssr68628	transcription start site region 68628	1053 bp upstream
Tssr68629	transcription start site region 68629	1072 bp upstream
Tssr68630	transcription start site region 68630	1111 bp upstream
Tssr68631	transcription start site region 68631	1147 bp upstream
Tssr68632	transcription start site region 68632	1269 bp upstream