rs215626450 SNP Detail

Summary

• ID
  rs215626450
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:126395755 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCTTATATG AGAGACCAGG
  GTTGGGAATC TTCGAGACAC CCTGGAAGTT GTGGAGCTTC TGAACTTGGA TCTGAGATGT
  AAAATCGTAA AATGGGCTGG TGCTAAATTC CTCTGTGCGT AGCTTGTGCA CTACAGATCT
  CCAGTGGCAG ACACTACTTT CACTCACCGC TCCTCCCAGA CATATGTACC AATGCCATTT
  R
  CCTACTAACT GAACCAATCA CTTCTTCCGC TCTCATGGCG GTGGTACTGG AGATTGTATG
  CAGTGAACAA GCACTCTTCC ACTGAGCTGC ACCTCCAGCC CTGACCCATC ATTTTCAATA
  CCTTAGGATA GTACATGATC CCTCTCCCCC GGCCCCTCAT ATTATATAGT AAAGACCCGA
  AGCTAGTGGG TTCCCATCCG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322860936	CHEV_8_128192916	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs215626450					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:126395755 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21286	CpG island 21286	337 bp proximal
Gm30871	predicted gene, 30871	1893 bp upstream
Gm63868	predicted gene, 63868	within coordinates
Map10	microtubule-associated protein 10	802 bp upstream
Rr175263	regulatory region 175263	246 bp proximal
Rr186277	regulatory region 186277	445 bp proximal
Rr188607	regulatory region 188607	1330 bp distal
Tssr80077	transcription start site region 80077	812 bp upstream
Tssr83475	transcription start site region 83475	721 bp downstream