rs215632017 SNP Detail

Summary

• ID
  rs215632017
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:82423584 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATGTGTCACC GCGCTGGTAA AGTTCAAGGT TACCGCCGCC
  AACACTGCAG CAGGATCCGG GAGTGGCGAT CGCAGGCGAA ACTTTGCTGC GAGCCGACCA
  Y
  GTGTGTGCGC GAGGGGGAGC GCAAGCGAGT GCGCGCGGGT GGCGGGGCGC GCGCAGGAGA
  GGGCCGGGTG GGGGTGGGGG TGGGGGGGAG CAGGGAGAG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321185683	CHEV_4_82151251	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs215632017					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:82423584 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14398	CpG island 14398	within coordinates
Gm57123	predicted gene, 57123	436 bp downstream
Nfib	nuclear factor I/B	within coordinates
Rr594357	regulatory region 594357	50 bp distal
Rr594358	regulatory region 594358	within coordinates
Tssr37680	transcription start site region 37680	576 bp upstream
Tssr42247	transcription start site region 42247	449 bp upstream
Tssr42248	transcription start site region 42248	118 bp upstream
Tssr42249	transcription start site region 42249	92 bp upstream
Tssr42250	transcription start site region 42250	within coordinates
Tssr42251	transcription start site region 42251	23 bp downstream
Tssr42252	transcription start site region 42252	249 bp downstream
Tssr42253	transcription start site region 42253	332 bp downstream
Tssr42254	transcription start site region 42254	371 bp downstream
Tssr42255	transcription start site region 42255	402 bp downstream
Tssr42256	transcription start site region 42256	456 bp downstream
Tssr42257	transcription start site region 42257	486 bp downstream
Tssr42258	transcription start site region 42258	511 bp downstream
Tssr42259	transcription start site region 42259	1085 bp downstream