rs215638611 SNP Detail

Summary

• ID
  rs215638611
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:129157578 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGAGTGTGC TGAAAGAGAA
  ACGAAACACA AAGTAAACCA GAAGCAAACA GGAAAGTCAG TCTCCAGATG GCGCCAGTGT
  GGCTCCTGAC CTTGAAATGC GTTTCCCAAT GAGATTTTGT TAGGCCCTGA GCCAACCAAG
  CGTGTGTGTA TGTACAGAAA GGAGGAGCTA CAGGATTAGC TAAATACTGA AACCTCCCCA
  Y
  GTATTTGTGC CTCTCAGCTT TCAAGTTTCA ATCCTGTAGT GGAAACTCAG CTCCTCAGCT
  CTGAGATGTG TGTCACAAAG GCTTCCCTAC CTATGCTTAG TCCCACAGGC AGCCCGCAGG
  AGGTAGAAGT GGGTAAGTAT TCAATAGTAT TTGAACCAAT GGGAGGGGCA GAGAGGAGTT
  TCAAACAGGG CAGGAAGGCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss370045167	MGP_WTSI_6_129130633	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C	C	C	C	T	C	T	C	C	C	T	T	C	C	T	C	C	T	C	C	C	C	C	C	C	T	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs215638611					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C	C	C	C	T	C	T	C	C	C	T	T	C	C	T	C	C	T	C	C	C	C	C	C	C	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss370045167	MGP_WTSI_6_129130633	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:129157578 () rs orientation: forward

Symbol	Name	Function Class
Clec2d	C-type lectin domain family 2, member d	within coordinates
Gm53342	predicted gene, 53342	within coordinates
Gm68195	predicted gene, 68195	250 bp downstream
Rr368193	regulatory region 368193	within coordinates
Rr639386	regulatory region 639386	1129 bp distal
Rr639387	regulatory region 639387	within coordinates
Rr639388	regulatory region 639388	123 bp distal
Rr639389	regulatory region 639389	11 bp proximal
Rr639390	regulatory region 639390	1029 bp proximal
Rr639391	regulatory region 639391	1876 bp proximal
Tssr59096	transcription start site region 59096	within coordinates
Tssr59097	transcription start site region 59097	24 bp upstream
Tssr59098	transcription start site region 59098	302 bp upstream
Tssr59099	transcription start site region 59099	336 bp upstream
Tssr59100	transcription start site region 59100	360 bp upstream
Tssr59101	transcription start site region 59101	653 bp upstream
Tssr59102	transcription start site region 59102	728 bp upstream
Tssr59103	transcription start site region 59103	1237 bp upstream
Tssr59104	transcription start site region 59104	1307 bp upstream