rs215644685 SNP Detail

Summary

• ID
  rs215644685
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:127223393 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGGATTTGC ACACTCAATT
  CAGAGCTTGA GAGTGGAGTT CTCAGAGAGG CTGTGGGAGG GCTGGGCAGA ACGGCAGAGG
  ACCAACCGAG CCAGGAATTA GATGGCAGTA TTGCTGCCCT CCACAGGGTC TGTCTTTTGA
  GAATCTCAGT TCTCGACTAG ATGGGGGTAT CTGGGAAGCC CTAGAGCGTG AAGACCCTTA
  Y
  GGGTTTGGTC CTGGCACTTA CTTTTAAACC TTCCAGGGAG GGCCAAAGAT TAGCACCTGG
  ATTCTGACCC CCCAGGAAAT GCCAGGACTG CGTTTACTAG CTGGGAGAAA TCCAAGAGAA
  TTCTGTAATG TCGCTAACCC TGTTCCTTAT CTCTTATCTT GGATTACTGC AAGAATCTTC
  GACTGTTCCC TCCCCAGCCG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss363174045	MGP_WTSI_4_127006844	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs215644685					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss363174045	MGP_WTSI_4_127006844	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:127223393 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14848	CpG island 14848	596 bp proximal
Gjb3	gap junction protein, beta 3	within coordinates
Gm40251	predicted gene, 40251	within coordinates
Rr599858	regulatory region 599858	1838 bp distal
Rr599859	regulatory region 599859	450 bp distal
Rr599860	regulatory region 599860	127 bp distal
Rr599861	regulatory region 599861	117 bp proximal
Rr599862	regulatory region 599862	618 bp proximal
Rr599863	regulatory region 599863	1234 bp proximal
Tssr43418	transcription start site region 43418	445 bp upstream
Tssr43419	transcription start site region 43419	947 bp downstream
Tssr43420	transcription start site region 43420	1175 bp downstream
Tssr43421	transcription start site region 43421	1199 bp downstream