rs215669060 SNP Detail

Summary

• ID
  rs215669060
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:105435475 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTTTAGCAG TAGCAATACC
  ATATAGCTTT CCTTGTAGTA TGGATATATG GTCCATGACT GTCTCCTAGA AGTTGTACAA
  GAGGTTCGGA GGTAAGGACA GTTACAACAC AACCTTCTAT TAGTTCTGAG TCACCTGTGA
  CTTATGTGAG CAGGCTGAGG AGATACATAA AAATCCCTGT CATGCCCTGC CTGATAGTAT
  K
  TCCAATTGGC ATGTGTTGTT CTGAGAGGTG CTGGCAACAC CATTGTCTCC TGTGGTATGA
  GTTGGCTGTG GCAATGACTC TTCATGTAAC ATGGCTGGAA CATTACTGTT GTATGGACAC
  CACACTGAGA ACTTCTTCCA CAGGTACATG CTAGCTTGGC AGGCATCTAT AGTGGGTGTA
  AGTTGGTTCT GACAGTTCCT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322370575	CHEV_7_112934782	CHEVERUD	SCREENING_POP	f	SNP	T	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs215669060					SNP	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:105435475 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19545	CpG island 19545	556 bp proximal
Dchs1	dachsous cadherin related 1	within coordinates
Gm57787	predicted gene, 57787	619 bp downstream
Rr652815	regulatory region 652815	within coordinates
Rr652816	regulatory region 652816	1376 bp proximal
Tssr74105	transcription start site region 74105	1215 bp downstream
Tssr74106	transcription start site region 74106	1238 bp downstream
Tssr74107	transcription start site region 74107	1276 bp downstream
Tssr74108	transcription start site region 74108	1299 bp downstream