rs215677999 SNP Detail

Summary

• ID
  rs215677999
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:42205269 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGTCCCCCC TCCCTCCAGG
  GTCCTCCTCC TCCTCCTCCT CCCTACCAGG GCCAGGGCGA GGGGCGGGGC TGGGAGACAC
  CATGACGTCA CCGGGCCGGC CCACAGCCTG CTCTAGAAAG TCAAAAGACG GTAAAGAGAA
  TCCGGCCCCG CCCGGCCCCG CCCCTCCTCC CGGGCCAACC GCCCCCGACT GCGGCCCGGC
  C
  GGGCTTCCCC GGGCCGCGGA GCCCCGCCTC CGCTGCCGCC CCGCCCCGCC CCGCCCTTCG
  GGCCGCGCCT CCTCCTGCGT CCTGGGTCCC CGCGGCGGGG CCTGCGGCGG GCGGGCGGGC
  GGGCGGGGCG GCAGGGGGCC CCGGGCCGGC TTCACAGGAG CCCGCCCTCC CGCCGCAGCC
  CCCGCCCCGC CGCCCCCGGG                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	JF1/MsJ	LG/J	LP/J	MA/MyJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	SWR/J	WSB/EiJ
ss388403608	MGP_WTSI_13_42147162	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	JF1/MsJ	LG/J	LP/J	MA/MyJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	SWR/J	WSB/EiJ
rs215677999					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss388403608	MGP_WTSI_13_42147162	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:42205269 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5502	CpG island 5502	1970 bp distal
Cpgi5503	CpG island 5503	within coordinates
Gm28707	predicted gene 28707	1218 bp downstream
Gm61288	predicted gene, 61288	within coordinates
Gm61314	predicted gene, 61314	within coordinates
Hivep1	human immunodeficiency virus type I enhancer binding protein 1	35 bp upstream
Rr281297	regulatory region 281297	within coordinates
Rr403731	regulatory region 403731	84 bp downstream
Rr403732	regulatory region 403732	963 bp upstream
Tssr119426	transcription start site region 119426	471 bp downstream
Tssr119427	transcription start site region 119427	20 bp downstream
Tssr119428	transcription start site region 119428	49 bp upstream
Tssr119429	transcription start site region 119429	203 bp upstream
Tssr119430	transcription start site region 119430	222 bp upstream
Tssr119431	transcription start site region 119431	319 bp upstream
Tssr119432	transcription start site region 119432	523 bp upstream
Tssr119433	transcription start site region 119433	1217 bp upstream
Tssr122226	transcription start site region 122226	1000 bp downstream
Tssr122227	transcription start site region 122227	1146 bp downstream