rs215686489 SNP Detail

Summary

• ID
  rs215686489
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:13840501 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGGCGGCGGC GCGGACAGGC GGGTGGGGAG AGGGTGCTAC
  GGCCCCGGGA GCTCCTGAAC GCTCGAATCC AAAGAGTGGG CGGCGCGCGG TCGAGCTCCG
  Y
  GGAGAGCCCA CCCGGAGGAG GCGCTCCGGG CGCCGGCACC GCCCAGAAGC CAGTGTCTGC
  GCTCCAGCGC AGCGACCTCT TGGGAACCTC CCTTGAGGG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss379498353	MGP_WTSI_10_13684563	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	C	C	T	T	C	T	T	T	T	C	T	T	T	T	T	T	C	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs215686489					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	C	C	T	T	C	T	T	T	T	C	T	T	T	T	T	T	C	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss379498353	MGP_WTSI_10_13684563	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:13840501 () rs orientation: forward

Symbol	Name	Function Class
2900084C01Rik	RIKEN cDNA 2900084C01 gene	1017 bp upstream
Cpgi1318	CpG island 1318	within coordinates
Gm56954	predicted gene, 56954	within coordinates
Gm66890	predicted gene, 66890	within coordinates
Hivep2	human immunodeficiency virus type I enhancer binding protein 2	1318 bp upstream
Rr384171	regulatory region 384171	within coordinates
Rr427854	regulatory region 427854	127 bp distal
Rr427855	regulatory region 427855	within coordinates
Rr427856	regulatory region 427856	975 bp proximal
Rr427857	regulatory region 427857	1510 bp proximal
Rr427858	regulatory region 427858	1633 bp proximal
Tssr3141	transcription start site region 3141	1354 bp upstream
Tssr92402	transcription start site region 92402	110 bp downstream
Tssr92403	transcription start site region 92403	39 bp upstream
Tssr92404	transcription start site region 92404	70 bp upstream
Tssr92405	transcription start site region 92405	92 bp upstream
Tssr92406	transcription start site region 92406	257 bp upstream
Tssr92407	transcription start site region 92407	482 bp upstream
Tssr92408	transcription start site region 92408	501 bp upstream
Tssr92409	transcription start site region 92409	533 bp upstream
Tssr92410	transcription start site region 92410	571 bp upstream
Tssr92411	transcription start site region 92411	1022 bp upstream
Tssr92412	transcription start site region 92412	1094 bp upstream
Tssr92413	transcription start site region 92413	1126 bp upstream
Tssr92414	transcription start site region 92414	1336 bp upstream
Tssr92415	transcription start site region 92415	1417 bp upstream
Tssr92416	transcription start site region 92416	1449 bp upstream
Tssr92417	transcription start site region 92417	1482 bp upstream
Tssr92418	transcription start site region 92418	1511 bp upstream
Tssr96784	transcription start site region 96784	887 bp downstream
Tssr96785	transcription start site region 96785	905 bp downstream
Tssr96786	transcription start site region 96786	1993 bp downstream