rs215695054 SNP Detail

Summary

• ID
  rs215695054
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:89732686 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATCTTTATC CCCCTGGAAA
  CGTGTTGCAG TTTAGCCGCT AAAATGTGTG CATATCACAC ACTCACATTT CCCGCCTGGT
  ACTTCCAAGC CCCCAAGGGG GTGAAGTTTA AAGTTGGGTT GTTCCTCACT GCTTCCTTTC
  ATTTTTGCAT AATCGAACGG ATGGGGTAAC CTAGCCCAGG GCAAATCTAC CCAGCTTGCT
  Y
  GCAAATGCTC TCCCGGTCCG CACCTGCTGC GAAAAAAATA ATTCCAATTT TGGTACTATT
  CGGAAAGTCT TTGGGGGTTC CTCAGCGATA TTAGATAATT GAATATAGCT TTCTCTCGTT
  GATAAAATAT ATCTCACACA TGCAGCTCGC CCCCCCCCCC CCCACGCCCC AAGTCCCAAC
  TCCCTCAGCG CCCAAGTCAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss375503443	MGP_WTSI_8_91529957	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs215695054					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss375503443	MGP_WTSI_8_91529957	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:89732686 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20796	CpG island 20796	376 bp proximal
Gm56831	predicted gene, 56831	within coordinates
Rr1386	regulatory region 1386	1361 bp distal
Rr366841	regulatory region 366841	within coordinates
Rr406251	regulatory region 406251	within coordinates
Tssr82368	transcription start site region 82368	554 bp downstream
Tssr82369	transcription start site region 82369	582 bp downstream
Tssr82370	transcription start site region 82370	601 bp downstream
Tssr82371	transcription start site region 82371	613 bp downstream
Tssr82372	transcription start site region 82372	639 bp downstream
Tssr82373	transcription start site region 82373	1221 bp downstream