rs215701406 SNP Detail

Summary

• ID
  rs215701406
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:44511189 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCAAACAAA ACTTCCACAC
  CTCTGAGTTC TGATGACCCG CTGTCTCTGG AAGGGGAGGA CAGGGACATG AGTGGCATTT
  GTCCGGTTCG TCAGCCGCTC TTGAGCTCCT GATGGGTCAT GGAAGGAGCC CAGGGGATGT
  TTTGGGAGCA GAGAAGGTGG GTGTTGGGGG GGTTCGCTCG CGTGTCCTGG GTGACAGGGG
  K
  ATGCGGGACA CAGTCTGGCT TAGCCATCTA ACTCTGCGTC TTTGGTCGCA GCGGGGTGGG
  TCTGGCCCGG GCTCACTTTG AGAAGCAGCC GCCTTCTAAC CTGCGGAAAT CCAACTTCTT
  CCACTTCGTC CTGGCCCTCT ACGACAGACA GGGCCAGCCC GTGGAGATTG AGAGGACGGC
  CTTTGTGGGG TTCGTGGAGA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss383201307	MGP_WTSI_11_44433864	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs215701406					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss383201307	MGP_WTSI_11_44433864	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:44511189 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2763	CpG island 2763	1733 bp distal
Cpgi2764	CpG island 2764	within coordinates
D11Mit175	DNA segment, Chr 11, Massachusetts Institute of Technology 175	770 bp distal
Ebf1	early B cell factor 1	within coordinates
Rr445654	regulatory region 445654	1646 bp distal
Tssr3469	transcription start site region 3469	455 bp upstream
Tssr3470	transcription start site region 3470	1248 bp upstream
Tssr101044	transcription start site region 101044	1771 bp downstream
Tssr101045	transcription start site region 101045	788 bp upstream
Tssr101046	transcription start site region 101046	820 bp upstream
Tssr101047	transcription start site region 101047	834 bp upstream
Tssr101048	transcription start site region 101048	849 bp upstream